Phage Discovery

where we develop next-gen discovery tools for phage genomics.

  • PhageBoost: Predicting prophage novel regions using biological feature engineering and machine learning
    Click to access prediction server

  • PhageCompass: An AI driven navigation system for phage genomes

  • PhageFun: Functional annotation of phage genomes in feature space

Recent publications in Phage Therapy and Phage Discovery

Analysis of Selection Methods to Develop Novel Phage Therapy Cocktails Against Antimicrobial Resistant Clinical Isolates of Bacteria

Haines MEK, Hodges FE, Nale JY, Mahony J, van Sinderen D, Kaczorowska J, Alrashid B, Akter M, Brown N, Sauvageau D, Sicheritz-Pontén T, Thanki AM, Millard AD, Galyov EE, Clokie MRJ.

Front Microbiol. 2021 Mar 29

The Effect of Oxygen Availability on Bacteriophage Infection: A Review

Francesca E. Hodges, Thomas  Sicheritz-Pontén and Martha R.J. Clokie

PHAGE Therapy, Applications and Research, Vol 2, No. 1 , 2021 Mar 17

“Virus Amigos?” The Journey of the Development of Phage-Based Biocontrol in the Latin American Poultry and Aquaculture Industries

Guillermo Rangel-Pineros. Thomas  Sicheritz-Pontén and Martha R. J. Clokie

PHAGE Therapy, Applications and Research, Vol 2, No. , 2021 Mar 17

Rapid discovery of novel prophages using biological feature engineering and machine learning.

Sirén K, Millard A, Petersen B, Gilbert MTP, Clokie MRJ, Sicheritz-Pontén T.

NAR Genom Bioinform. 2021 Jan 6

Rethinking Phage Ecology by Rooting it Within an Established Plant Framework

Martha R.J. ClokieBob G. BlasdelBenoit O.L. Demars and Thomas Sicheritz-Pontén

PHAGE Therapy, Applications and Research Vol 1, No.3 2020 Dec 16

A Local Perspective on Phage-Based Biocontrol in Agriculture and Aquaculture in India

Kiran Kondabagil, Thomas  Sicheritz-Pontén and Martha R.J. Clokie

PHAGE Therapy, Applications and Research Vol 1, No.3, 2020 Dec 16